Environmental DNA and participatory science to map groundwater fauna

Figure 1 from https://doi.org/10.1038/s41598-023-44908-8

In our most recent study, published in Scientific Reports (https://doi.org/10.1038/s41598-023-44908-8), we used participatory science and environmental DNA (eDNA) metabarcoding to investigate groundwater amphipods and to capture a broader picture of the groundwater community, including microorganisms. Combining both methods revealed co-occurring amphipod species and their correlation with overall groundwater biodiversity, enhancing our understanding of subterranean ecosystems. In conclusion, we propose two novel methods for studying groundwater organisms, which can be applied independently or, more effectively, in combination. These approaches offer valuable tools for addressing uncharted aspects of subterranean biology.

Hints on how to keep Gammarus fossarum

Flow through system at Eawag, used to keep Gammarus fossarum.

Being a field biologist by training, I always wanted to study my beloved amphipods under laboratory conditions. Turns out it is not as straightforward. Our recent publication in Science of The Total Environment highlights some of the things we learned over the last few years. While some amphipod species such as Hyalella azteca are easy to breed in captivity, the freshwater genus Gammarus from Central Europe is notoriously hard to keep and maintain in the lab. Hence, most experiments rely on wild-caught animals. From an scientific point of view, having lab-bred individuals available is the preferred option. To improve survival and reproduction in lab cultures of Gammarus fossarum, we caught thousands of G. fossarum and ran several experiments in our laboratory facilities, tweaking around with food supply, day-length, water temperature, cage size etc. We supplemented the diet of G. fossarum with protein-rich food and provided additional shelter. Both these measures increased survival rate of laboratory-based populations significantly, especially the feed enrichment. We also manipulated the day length (fixed vs. variable). We did not observe a significant effect of day length on the abundance and reproductive activity of G. fossarum. Apart from these main findings, we provide several detailed husbandry protocols in the paper (https://doi.org/10.1016/j.scitotenv.2022.158730). They are intended as starting point for future experiments in environmental sciences and ecotoxicology that rely on lab-bred G. fossarum. I want to thank everyone involved in improving our lab cultures of G. fossarum, especially Sarah Bollina, Eva Cereghetti, Morris Galli, Samuel Hürlemann, Silvana Kaeser, Chelsea Little, Manja Schleich and I want to acknowledge financial support by Eawag, University of Zurich, and BAFU.

New groundwater amphipod discovered

Niphargus arolaensis, a newly described groundwater amphipod from Switzerland

Thanks to the collaboration with many water well managers, Nicole Bongni was able to describe a previously undocumented biological diversity in groundwater in her master’s thesis. The focus was on amphipods, in particular the genus Niphargus. Among the discoveries was a completely new species, which we have now described scientifically in Subterranean Biology. The name of the new species: Niphargus arolaensis, the Aare groundwater amphipod. The name is derived from the fact that we have only been able to detect the species at three sites in the Aare River basin. This research shows that we still understand the groundwater habitat far too poorly and therefore cannot protect it adequately. Thanks to the project AmphiWell we can continue basic research on this topic.

Gammarus fossarum is Animal of the year 2021!

It is an ambassador for healthy and diverse streams. Where it occurs in large numbers, the stream is healthy. Being named animal of the year, Gammarus fossarum is also a tribute to the countless small, inconspicuous organisms that keep freshwater ecosystems functioning in the first place. More information about the animal of the year can be found on the Pro Natura webpage (in German).